作業は /work00/"ユーザ名" で行う．

データ分割ソフト(util_split-2010-09-25)のMakefileは以下のように編集する

16行目 NCDIR = /work00/lib-mpi/netcdf-c-4.6.3-mpi
27行目 NCDIR = /work00/lib-mpi/netcdf-fortran-4.4.5-mpi



export LD_LIBRARY_PATH="/work00/lib-mpi/zlib-1.2.11-mpi/lib:/work00/lib-mpi/hdf5-1.10.5-mpi/lib:/work00/lib-mpi/netcdf-c-4.6.3-mpi/lib:/work00/lib-mpi/netcdf-fortran-4.4.5-mpi/lib:/work00/lib-mpi/gtool5-20160613-mpi/lib:/work00/lib-mpi/ispack-1.0.4-mpi:/work00/lib-mpi/spml-0.8.0-mpi/lib"

@/work00/ono/dcpam
$ ldd  bin/dcpam_main
でdcpam実行に必要なライブラリのパスが通っているかを調べる．
管理ノードだけでなく計算ノードでもこのコマンドを実行して調べること．
どこかにnot foundがあったらエラーで実行できない．

以下のスクリプトで走った．
#!/bin/sh
#PBS -N earth_test
#PBS -j oe
#PBS -o /work00/ono/dcpam
#PBS -q long
#PBS -l select=2:ncpus=1

export LD_LIBRARY_PATH="/work00/lib-mpi/zlib-1.2.11-mpi/lib:/work00/lib-mpi/hdf5-1.10.5-mpi/lib:/work00/lib-mpi/netcdf-c-4.6.3-mpi/lib:/work00/lib-mpi/netcdf-fortran-4.4.5-mpi/lib:/work00/lib-mpi/gtool5-20160613-mpi/lib:/work00/lib-mpi/ispack-1.0.4-mpi:/work00/lib-mpi/spml-0.8.0-mpi/lib"

cd $PBS_O_WORKDIR

/work00/openmpi1/bin/mpiexec --hostfile /work00/openmpi1/host -np 2 ./bin/dcpam_main -N=./conf/dcpam_E_T21L26.conf > earth.log 2>&1
exit0


データ統合ソフト
$ wget http://www.gfd-dennou.org/library/dcpam/related-program/util_merge-2011-03-28-2.tgz
$ tar zxvf util_merge-2011-03-28-2.tgz
$ cd util_merge-2011-03-28-2/
$ vim Makefile
$ vim merge.mnl
$ cp merge.nml ../
$ cp merge_ncf
$ ../
$ ./merge_ncf
$ exit

@local Ubuntu
$ sftp ono@nozomi
$ cd /work00/ono/dcpam2
$ get U.nc
$ get V.nc
$ get Temp.nc
$ exit
$ gpview Temp.nc@Temp,time=360,sig=5



 1438  /work00/openmpi1/bin/mpiexec -n 2 ./bin/dcpam_init_data -N=./conf/init_data_E_T21L26.conf
/work00/openmpi1/bin/mpiexec -n 2 ./bin/dcpam_init_data_surface -N=./conf/surface_data_E_T21.conf


/dcpam_init_data_surface -N=./conf/surface_data_E_T21.conf
./bin/dcpam_init_data_surface: error while loading shared libraries: libnetcdff.so.6: cannot open shared object file: No such file or directory
./bin/dcpam_init_data_surface: error while loading shared libraries: libnetcdff.so.6: cannot open shared object file: No such file or directory
./bin/dcpam_init_data_surface: error while loading shared libraries: libnetcdff.so.6: cannot open shared object file: No such file or directory
--------------------------------------------------------------------------
Primary job  terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
--------------------------------------------------------------------------
./bin/dcpam_init_data_surface: error while loading shared libraries: libnetcdff.so.6: cannot open shared object file: No such file or directory
--------------------------------------------------------------------------
mpiexec detected that one or more processes exited with non-zero status, thus causing
the job to be terminated. The first process to do so was:
 
  Process name: [[55648,1],0]
  Exit code:    127
-------------------------------------------------------------------