### 並列版 DCPAM ビルドログ
### 2019/06/09 吉田哲治 作成
### DCPAM を nozomi にインストール際のログ
### zlib, hdf5, netcdf-c, netcdf-fortran, gtool5, ispack, spml, dcpam の順にインストールしている
### wget をどこからしたかは少しあいまい

### 最終的には以下の環境変数でビルド完了したが, gtool5 以前でもこれで出来るのかは分からない(出来ると思っている)
### % FLAGS に入れるべきものは入れた方がよい?
環境変数の設定
  自分は以下を .bashrc の最後に書き足した
   * sudo を使っても読み込まれる場所に入れておくとよい?
   * CC と CXX の -fPIC は FLAGS に入れるのが自然かもしれない
    export CC="mpicc   -fPIC"
    export CXX="mpicxx -fPIC"
    export FC="mpif90  "
    export F77="mpif90 "
    export F90="mpif90 "
    export CFLAGS="-fast   "
    export CXXFLAGS="-fast "
    export FFLAGS="-fast   -fPIC"
    export FCFLAGS="-fast  "
    export F77FLAGS="-fast "
    export F90FLAGS="-fast "
    export CPPFLAGS="-D=pgiFortran"
  $ sudo -Es で管理者になった場合, PATH は引き継がれない
  そのため, ビルドした mpich2 と pgifortran のPATH を追加するため

--- zlib ---
$ wget https://www.zlib.net/zlib-1.2.11.tar.gz
$ tar zxvf zlib-1.2.11.tar.gz
$ mv zlib-1.2.11 zlib-1.2.11-mpi
$ cd zlib-1.2.11-mpi
$ ./configure --prefix=/work00/lib-mpi/zlib-1.2.11-mpi
$ make 
$ make check
$ sudo make check install

--- hdf5 ---
$ wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.5/src/hdf5-1.10.5.tar.gz
$ ./configure --prefix=/work00/lib-mpi/hdf5-1.10.5-mpi --with-zlib=/work00/lib-mpi/zlib-1.2.11-mpi --enable-fortran --enable-parallel 1>conflog 2>error_conflog
$ make 1>makelog 2>error_makelog
$ make check 1>make_check_log 2>error_make_check_log
$ sudo -Es
# export PATH=/work00/pgi/linux86-64/2018/bin:/work00/mpich2/bin:$PATH
# make install
# make check-install

--- netcdf-c ---
$ wget https://github.com/Unidata/netcdf-c/archive/v4.6.3.tar.gz
$ tar zvxf v4.6.3.tar.gz
$ mv netcdf-c-4.6.3 netcdf-c-4.6.3-mpi
$ cd netcdf-c-4.6.3-mpi
$ export LD_LIBRARY_PATH="/work00/lib-mpi/zlib-1.2.11-mpi/lib:/work00/lib-mpi/hdf5-1.10.5-mpi/lib"
$ export LDFLAGS="-L/work00/lib-mpi/zlib-1.2.11-mpi/lib -L/work00/lib-mpi/hdf5-1.10.5-mpi/lib"
$ export CPPFLAGS="$CPPFLAGS -I/work00/lib-mpi/zlib-1.2.11-mpi/include -I/work00/lib-mpi/hdf5-1.10.5-mpi/include"
$ ./configure --prefix=/work00/lib-mpi/netcdf-c-4.6.3-mpi --enable-parallel-tests --disable-dap 1>conflog 2>error_conflog
$ vi h5_test/run_par_tests.sh nc_test4/run_par_test.sh 
       nozomi では `mpiexec -n 1 $(file.sh)` は動かないので並列数が 1 or 多いテストをコメントアウト
$ make check 1>make_check_log 2>error_make_check_log
$ sudo -Es
# export PATH=/work00/pgi/linux86-64/2018/bin:/work00/mpich2/bin:$PATH
# make install

--- netcdf-fortran ---
$ wget https://github.com/Unidata/netcdf-fortran/archive/v4.4.5.tar.gz
$ tar zxvf v4.4.5.tar.gz
$ mv netcdf-fortran-4.4.5 netcdf-fortran-4.4.5-mpi
$ cd /work00/downloads/netcdf-fortran-4.4.5-mpi/
$ export CPPFLAGS="$CPPFLAGS -I/work00/lib-mpi/zlib-1.2.11-mpi/include -I/work00/lib-mpi/hdf5-1.10.5-mpi/include -I/work00/lib-mpi/netcdf-c-4.6.3-mpi/include"
$ export LDFLAGS="-L/work00/lib-mpi/zlib-1.2.11-mpi/lib -L/work00/lib-mpi/hdf5-1.10.5-mpi/lib -L/work00/lib-mpi/netcdf-c-4.6.3-mpi/lib"
$ export LD_LIBRARY_PATH="/work00/lib-mpi/zlib-1.2.11-mpi/lib:/work00/lib-mpi/hdf5-1.10.5-mpi/lib:/work00/lib-mpi/netcdf-c-4.6.3-mpi/lib"
$ ./configure --prefix=/work00/lib-mpi/netcdf-fortran-4.4.5-mpi --enable-parallel-tests --with-pic 1>conf_log 2>error_conf_log
$ vi nf_test/ftst_rengrps.F
       implicit none
      program 
     となっているので program のインデントを implicit none と同じインデントに修正
$ make check 1>make_check_log 2>error_make_check_log
$ sudo -Es
# export PATH=/work00/pgi/linux86-64/2018/bin:/work00/mpich2/bin:$PATH
# make install

--- gtool5 ---
$ tar zxvf gtool5_current.tgz
$ mv gtool5-20160613 gtool5-20160613-mpi
$ cd gtool5-20160613-mpi/
環境変数の設定 * 文頭と同じ
    export CC="mpicc   -fPIC"
    export CXX="mpicxx -fPIC"
    export FC="mpif90  "
    export F77="mpif90 "
    export F90="mpif90 "
    export CFLAGS="-fast   "
    export CXXFLAGS="-fast "
    export FFLAGS="-fast   -fPIC"
    export FCFLAGS="-fast  "
    export F77FLAGS="-fast "
    export F90FLAGS="-fast "
    export CPPFLAGS="-D=pgiFortran"
$ export LD_LIBRARY_PATH="/work00/lib-mpi/zlib-1.2.11-mpi/lib:/work00/lib-mpi/hdf5-1.10.5-mpi/lib:/work00/lib-mpi/netcdf-c-4.6.3-mpi/lib:/work00/lib-mpi/netcdf-fortran-4.4.5-mpi/lib"
$ export SYSFFLAGS="$CPPFLAGS -I/work00/lib-mpi/zlib-1.2.11-mpi/include -I/work00/lib-mpi/hdf5-1.10.5-mpi/include -I/work00/lib-mpi/netcdf-c-4.6.3-mpi/include -I/work00/lib-mpi/netcdf-fortran-4.4.5-mpi/include"
$ ./configure --prefix=/work00/lib-mpi/gtool5-20160613-mpi --enable-mpi --with-netcdf=/work00/lib-mpi/netcdf-c-4.6.3-mpi/lib/libnetcdf.a --with-netcdff=/work00/lib-mpi/netcdf-fortran-4.4.5-mpi/lib/libnetcdff.a --with-netcdf-include=/work00/lib-mpi/netcdf-fortran-4.4.5-mpi/include/netcdf.inc --with-mpiexec=mpiexec 1>config_log 2>error_config_log
$ make 1>make_log 2>error_make_log
$ make test
$ make test-mpi
$ sudo -Es
# export PATH=/work00/pgi/linux86-64/2018/bin:/work00/mpich2/bin:$PATH
# make install

--- ispack ---
$ wget http://www.gfd-dennou.org/library/ispack/ispack-1.0.4.tar.gz
$ tar zxvf ispack-1.0.4.tar.gz
$ mv ispack-1.0.4 ispack-1.0.4-mpi
$ cd ispack-2.1.3-mpi/
# mkdir /work00/lib-mpi/ispack-1.0.4-mpi
$ vi Mkinclude
      DESTDIR         = /work00/lib-mpi/ispack-1.0.4-mpi
      FC              = mpif90
      FFLAGS          = -O3 -fast -fPIC
      MPIFC           = mpif90
      MPIFFLAGS       = -O3 -fast -fPIC
      CC              = mpicc
      CFLAGS          = -O3 -fast -fPIC
      SSE             = avx
$ sudo -Es
# export PATH=/work00/pgi/linux86-64/2018/bin:/work00/mpich2/bin:$PATH
# make install

--- spml ---
完了したが, make test は l_module のところでこける
$ wget http://www.gfd-dennou.org/library/spmodel/spml_current.tar.gz
$ tar zxvf spml_current.tar.gz
$ mv spml-0.8.0 spml-0.8.0-mpi
$ cd spml-0.8.0-mpi/
$ export LD_LIBRARY_PATH="/work00/lib-mpi/zlib-1.2.11-mpi/lib:/work00/lib-mpi/hdf5-1.10.5-mpi/lib:/work00/lib-mpi/netcdf-c-4.6.3-mpi/lib:/work00/lib-mpi/netcdf-fortran-4.4.5-mpi/lib:/work00/lib-mpi/gtool5-20160613-mpi/lib:/work00/lib-mpi/ispack-1.0.4-mpi:/work00/lib-mpi/spml-0.8.0-mpi/lib"
$ ./configure --with-netcdf=/work00/lib-mpi/netcdf-c-4.6.3-mpi/lib/libnetcdf.a --with-netcdff=/work00/lib-mpi/netcdf-fortran-4.4.5-mpi/lib/libnetcdff.a --with-netcdf-include=/work00/lib-mpi/netcdf-fortran-4.4.5-mpi/include/netcdf.inc --with-gtool5=/work00/lib-mpi/gtool5-20160613-mpi/lib/libgtool5-mpi.a --with-ispack=/work00/lib-mpi/ispack-1.0.4-mpi/libisp.a --with-mpifc=/work00/mpich2/bin/mpif90 --with-mpiexec=/work00/mpich2/bin/mpiexec --prefix=/work00/lib-mpi/spml-0.8.0-mpi --with-pic 1>conf_log 2>error_conf_log
$ make test 1>make_test_log 2>error_make_test_log
$ sudo -Es
# export PATH=/work00/pgi/linux86-64/2018/bin:/work00/mpich2/bin:$PATH
# make install

--- DCPAM ---
$ wget http://www.gfd-dennou.org/library/dcpam/dcpam5/dcpam5-20180304-2.tgz
$ tar zxvf dcpam5-20180304-2.tgz
$ mv dcpam5-20180304-2 dcpam5-20180304-2-mpi
$ cd dcpam5-20180304-2-mpi/
$ ./configure --with-netcdf=/work00/lib-mpi/netcdf-c-4.6.3-mpi/lib/libnetcdf.a --with-netcdff=/work00/lib-mpi/netcdf-fortran-4.4.5-mpi/lib/libnetcdff.a --with-netcdf-include=/work00/lib-mpi/netcdf-fortran-4.4.5-mpi/include/netcdf.inc --with-gtool5=/work00/lib-mpi/gtool5-20160613-mpi/lib/libgtool5-mpi.a --with-ispack=/work00/lib-mpi/ispack-1.0.4-mpi/libisp.a --with-spml=/work00/lib-mpi/spml-0.8.0-mpi/lib/libspml-omp.a --with-mpiexec=/work00/mpich2/bin/mpiexec --enable-mpi
$ make

インストール完了